RetroSignalModel
RetroSignalModel.ONE_SIGNAL
RetroSignalModel.RtgMTK
RetroSignalModel.ZERO_SIGNAL
RetroSignalModel.hil
RetroSignalModel.load_conditions
RetroSignalModel.load_data
RetroSignalModel.load_parameters
RetroSignalModel.resting_u0
RetroSignalModel.scan_params
RetroSignalModel.ONE_SIGNAL
— MethodDamage signal = 1
RetroSignalModel.RtgMTK
— FunctionrtgMTK(S = DEFAULT_SIGNAL; name, proteinlevels=STRESSED)
Make a RTG signalling ModelingToolkit (mtk) system with a time-dependent damage signal function S
and proteinlevels
for Rtg1, Rtg2, Rtg3, Bmh, and Mks proteins.
RetroSignalModel.ZERO_SIGNAL
— MethodDamage signal = 0
RetroSignalModel.hil
— Methodhil(x, k, n=1)
Hill function
\[hil(x, k, n) := rac{x^n}{x^n + k^n}\]
RetroSignalModel.load_conditions
— FunctionLoad boolean conditions for model validation.
RetroSignalModel.load_data
— MethodLoads a CSV file and returns a RowTable.
RetroSignalModel.load_parameters
— FunctionLoad model parameters
RetroSignalModel.resting_u0
— MethodResting initial conditions: all zeroes for all active components.
RetroSignalModel.scan_params
— FunctionScan for parameters that meet the boolean conditions in the retrograde (RTG) signalling model.